CascadiaTools worked example: GLM / GLMM with biological interpretation
Module: glm

These data are SIMULATED, so the true answer is known. See README_data.md.

To try it:
  1. Unzip this folder somewhere you can find it.
  2. Open the folder in Claude Code (with the CascadiaTools plugin installed).
  3. Paste the prompt below.

Prompt:
I have Wood Thrush point counts in wood_thrush_counts.csv: 45 stations, each counted 4 times in May-June 2025. Most counts were 10 minutes, some were 5. I want to know whether the number of thrushes changes with canopy cover, elevation and forest type. Please analyse it and give me a report with figures I can use in a paper.

The analysis settings used for the published example are in config.yaml.
WALKTHROUGH.md shows every step the agent took and the results.
Website: https://cascadiawildlifelab.org/tools/modules/glm.html
